Fig. 1
Antibiotic resistance genes detected in isolates of carbapenem-resistant Klebsiella pneumoniae originating from faeces samples from patients at admission and discharge, and from clinical isolates from blood and tracheal aspirates. For clarity, certain gene variants (specified below) have been aggregated into gene categories. These are, and consist of: blaSHV (non-ESBL): blaSHV-28, blaSHV-33, blaSHV-56, blaSHV-65, blaSHV-67, blaSHV-73, blaSHV-79, blaSHV-96, blaSHV-110, blaSHV-111, blaSHV-133, blaSHV-142, blaSHV-165, blaSHV-172, blaSHV-179, blaSHV-182, blaSHV-194, blaSHV-196; blaSHV (ESBL): blaSHV-12, blaSHV-13, blaSHV-30, blaSHV-38, blaSHV-42, blaSHV-99, blaSHV-106; blaTEM: blaTEM-1B, blaTEM-216; blaOXA: blaOXA-1, blaOXA-9, blaOXA-10; aac: aac(3)-IIa, aac(3)-IId, aac(6’)-Ib, aac(6’)-Ib3, aac(6’)-Ib-cr; aad: aadA1, aadA2b, aadA3, aadA16, aadA5; ant: ant(2″)-Ia, ant(3’)-VI; aph: aph(3″)-Ib, aph(6)-Id; blaOKP: blaOKP-B-2, blaOKP-B-3, blaOKP-B-4, blaOKP-B-8, blaOKP-B-10, blaOKP-B-14; fosA: fosA, fosA3, fosA5; oqxAB: oqxA, oqxB; qnrB: qnrB1, qnrB4, qnrB6, qnrB9; catB: catB3, catB8; arr: arr-2, arr-6; drfA: dfrA1, dfrA7, dfrA12, dfrA14, dfrA23, dfrA27