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Table 1 Primers for the detection of antibiotic resistance genes

From: Epidemic characterization and molecular genotyping of Shigella flexneri isolated from calves with diarrhea in Northwest China

Target

Primer sequence (5′ to 3′)

Amplicon size (bp)

Reference

β-lactamase

bla CTX-M-1

F: GGTTAAAAAATCACTGCGTC

873

Cui et al., 2015 [16]

R: TTACAAACCGTCGGTGACGA

bla CTX-M-2

F: CGACGCTACCCCTGCTATT

552

Zong et al., 2008 [17]

R: CCAGCGTCAGATTTTTCAGG

bla CTX-M-8

F: TCGCGTTAAGCGGATGATGC

689

Zong et al., 2008 [17]

R: AACCCACGATGTGGGTAGC

bla CTX-M-9

F: AGAGTGCAACGGATGATG

868

Cui et al., 2015 [16]

R: CCAGTTACAGCCCTTCGG

bla CTX-M-25

F: TTGTTGAGTCAGCGGGTTGA

497

Liu et al., 2015 [18]

R: GCGCGACCTTCCGGCCAAAT

bla SHV

F: CGCCGGGTTATTCTTATTTGTCGC

1015

Zong et al., 2008 [17]

R: TCTTTCCGATGCCGCCGCCAGTCA

bla TEM

F: ATGAGTATTCAACTTTCCG

876

This study

R: CCAATGCTTAATCAGTGAG

bla OXA

F: ATTAAGCCCTTTACCAAACCA

890

Cui et al., 2015 [16]

R: AAGGGTTGGGCGATTTTGCCA

bla MOX

F: GCTGCTCAAGGAGCACAGGAT

520

Cui et al., 2015 [16]

R: CACATTGACATAGGTGTGGTGC

bla FOX

F: AACATGGGGTATCAGGGAGATG

190

Cui et al., 2015 [16]

R: CAAAGCGCGTAACCGGATTGG

bla DHA

F: AACTTTCACAGGTGTGCTGGGT

405

Cui et al., 2015 [16]

R: CCGTACGCATACTGGCTTTGC

bla CIT

F: TGGCCAGAACTGACAGGCAAA

462

Cui et al., 2015 [16]

R: TTTCTCCTGAACGTGGCTGGC

bla ACC

F: AACAGCCTCAGCAGCCGGTTA

346

Cui et al., 2015 [16]

R: TTCGCCGCAATCATCCCTAGC

bla MIR

F: TCGGTAAAGCCGATGTTGCGG

302

Cui et al., 2015 [16]

R: CTTCCACTGCGGCTGCCAGTT

PMQRs

qnrA

F: ATTTCTCACGCCAGGATTTG

516

Colobatiu et al.,2015 [19]

R: GATCGGCAAAGGTTAGGTCA

qnrB

F: GATCGTGAAAGCCAGAAAGG

476

Colobatiu et al.,2015 [19]

R: ACGATGCCTGGTAGTTGTCC

qnrD

F: CGAGATCAATTTACGGGGAATA

656

Cui et al.,2015 [13]

R: AACAAGCTGAAGCGCCTG

qnrS

F: ACGACATTCGTCAACTGCAA

417

Colobatiu et al.,2015 [19]

R: TAAATTGGCACCCTGTAGGC

aac(6′)-Ib-cr

F: CCCGCTTTCTCGTAGCA

544

Colobatiu et al.,2015 [19]

R: TTAGGCATCACTGCGTCTTC

qepA

F: CGTGTTGCTGGAGTTCTTC

403

Colobatiu et al.,2015 [19]

R: CTGCAGGTACTGCGTCATG

QRDR

gyrA

F: TACACCGGTCAACATTGAGG

648

Hu et al.,2007 [20]

R: TTAATGATTGCCGCCGTCGG

gyrB

F: TGAAATGACCCGCCGTAAAGG

309

Hu et al.,2007 [20]

R: GCTGTGATAACGCAGTTTGTCCGGG

parC

F: GTACGTGATCATGGACCGTG

531

Hu et al.,2007 [20]

R: TTCGGCTGGTCGATTAATGC

parE

F: ATGCGTGCGGCTAAAAAAGTG

290

Hu et al.,2007 [20]

R: TCGTCGCTGTCAGGATCGATAC