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Table 3 Comparison of novel In1059 with other integrons in the study

From: Characterization of the novel In1059 harbouring VIM gene cassette

Integron

In1059

In846

In843

In37

In62

In1021

Pc variant

PcH1

PcH1

None

None

PcH1

PcH1

“-35”: tggaca

“-35”: tggaca

“-35”: tggaca

“-35”: ggacat

“-35”: taaact

“-10”: taaact

“-10”: ttcgta

“-10”: taaact

P2 promoter

Absent

Absent

Absent

Absent

Absent

Absent

PintI1

Yes

Yes

Yes

Yes

Yes

Yes

“-10”: agtcta

“-10”: agtcta

“-10”: agggcg

“-10”: agtcta

“-10”: agtcta

“-10”: agtcta

“-35”: cagcaa

“-35”: cagcaa

“-35”: catcgt

“-35”: cagcaa

“-35”: cagca

“-35”: cagcaa

19 bp ORF11 duplication

No

No

No

No

No

No

intI1

IntI1 R32_H39

IntI1 R32_H39

Remant of intI1

Remant of intI1

IntI1 R32_H39

IntI1 R32_H39

1010 bp-length

1014 bp-length

4 bp-length

720 bp-length

1014 bp-length

1014 bp-length

attI1

63 bp-length

63 bp-length

63 bp-length

63 bp-length

63 bp-length

63 bp-length

Array of gene cassettes

GCbla VIM-5 -

GCaacA4’-37-

(tniC-aadA16)-

(qacE 30-aadB)

GCbla VIM-1 -

GCaacA4cr-

(qacE 101-catB3) -

GCarr-3

GCaacA4cr -

GCarr-3 -

GCdfrA27 -

(qacE 101-aadA16Δ::IS26)

GCaacA4cr -

GCbla OXA-1 -

GCcatB3 -

GCarr-3

GCaacA4cr

GCaacA4cr -

(qacE 109-arr-3) -

GCdfrA27 -

(qacE 30-aadA16)

attC

attCbla VIM-5(L;R)

attC aacA4Δ(LΔ; R);

attC aadA16/aacA4(L;R);

attC aadBΔ(L; Del)

attCbla VIM-1(L;R);

attC aacA4cr(L;R);

attC catB3 (L;R);

attC aacA4(LΔ; R)

attC aacA4cr (L; R);

attC arr-3 (L;R);

attC dfrA27 (L;R);

attC aadA16 (L;R)

attC aacA4cr (L;R);

attCbla OXA-1(L;R);

attC catB3 (L;R);

attC arr-3 (L; R)

attC aacA4cr (L; R)

attC aacA4cr (L;R);

attC arr-3 (L; R);

attC dfrA27 (L; R);

attC aadA16(L;R) mutated

 3′-CS

qacEΔ1-sul1

qacEΔ1 (partial)

qacEΔ1 (partial)

qacEΔ1-sul1

qacEΔ1-sul1

IS15-sul1Δ-IS1

  1. Abbreviations: attC (L; R) left- and right-hand parts of attC in gene cassettes, attC (LΔ; R) truncated left- and normal right- hand parts of attC in gene cassettes, attC (L; Del) normal left- and deleted right-hand parts of attC in gene cassettes, suggesting no functional gene cassette, attC (L; R) mutated mutated left- and mutated right-hand parts of attC in gene cassettes, GC abbreviation of gene cassette