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Table 2 Microbiological isolatesa from patients in isolation for IPC purposes

From: Utilization of paediatric isolation facilities in a TB-endemic setting

Category

Variable

Total (%)

All suspected TB (n = 130)

pulmonary TB

118 (91)

 

extra-pulmonary TBb

12 (9)

TB smear microscopy (n = 130)

not tested (diagnosis confirmed at referral hospital)

10 (8)

 

smear-negative

108 (83)

 

smear-positive (1–10 AFB/field)

8 (6)

smear-positive (11–99 AFB/field)

4 (3)

Confirmed TBc (n = 55)

TB diagnosis confirmed at referral hospital

10

 

GeneXpert positive

43

 

TB culture positive

45

Drug-susceptibility profile of culture positive cases (n = 45)

Drug-susceptible (DS)

33 (74)

 

Multidrug-resistant (MDR)

9 (20)

 

Rifampicin mono-resistant (RMR)

2 (4)

 

Extensively drug-resistant (XDR)

1 (2)

 

Total (number DR)

All abacterial/fungal isolates cultured from patients in isolation (n = 46)

Gram positives

 

S. aureus total (methicillin-resistant)

7 (2)

 Other gram positivesd

4

Gram negatives: Enterobacteriaceae

 

K. pneumoniae (extended-spectrum B-lactamase)

11 (10)

E. coli (extended-spectrum B-lactamase)

5 (1)

E. cloacae (inducible B-lactamase)

4 (2)

 Other Enterobacteriaceaee

4

Gram negatives: Non-fermenters

 

A. baumanni (multi-drug resistant)

4 (4)

P. aeruginosa (multi-drug resistant)

5 (3)

Others

 

N. meningitidis

2

B. pertussis (PCR positive)

1

C. albicans

2

Viral pathogens confirmed among patients in isolation (n = 51)

Gastrointestinal viruses

 

 Hepatitis A

6

 Rotavirus

4

 Enteric adenovirus

2

Respiratory viruses

 

 Respiratory syncytial virus

15

 Adenovirus

12

 Rhinovirus

4

 Parainfluenza virus

2

 Other respiratory virusesf

3

Other

 

 Varicella

2

 Rubella

1

  1. aSome patients were isolated on clinical suspicion of sepsis or suspicion of a pathogen warranting isolation, but laboratory tests subsequently confirmed a pathogen which did not warrant isolation or transmission-based precautions by CDC guidelines[1] e.g. Candida albicans; TB = tuberculosis
  2. bExtra-pulmonary TB: disseminated (7), TB lymphadenitis (3), TB meningitis (2)
  3. cconfirmed TB = geneXpert positive or culture positive for mTB; DR = drug-resistant
  4. dOther gram positives: C. difficile (1), S. pyogenes (1), S. pneumoniae (1), E. faecium (1)
  5. eOther Enterobacteriaceae: S. typhi (1), S. non-typhi (1), C. freundii (1), P. mirabilis (1)
  6. Other respiratory virusesf: Influenza virus (1), Bocavirus (1), Human metapneumovirus (1)